Pubication List
2026
Hase Y, Yin Y-G, Suzui N, Kawachi N, Das P, Mamun ANK (2026). An affordable and easy-to-manage hydroponic system to cultivate hundreds of rice plants in a small space. microPublication Biology 10.17912/micropub.biology.002005.
Nobusawa T, Yamatani H, Kusaba M (2026). Promoter/Enhancer Replacement by Genome Editing for Crop Improvement. Trends in Plant Science 31, 273-281 (2026).
Yamatani H, Nakano M, Toyokura K, Murano A, Shimizu M, Shinoyama H, Taniguchi K, Kusaba M (2026). Genome editing using a new self-compatible model strain of the genus Chrysanthemum. Horticulturae 12, 320 (2026).
2025
Hase Y, Nagafune I, Satoh K (2025). Repeated artificial mutagenesis during experimental evolution accelerates the acquisition of high-temperature tolerance by Bradyrhizobium diazoefficiens. Mutation Research -Fundamental and Molecular Mechanisms of Mutagenesis- 831, 111919.
Kubo S, Sano T, Kawachi M, Hase Y, Satoh K, Oono Y, Iwata Y, Endo H, Araie H, Yoneda K, Maeda Y, Suzuki I (2025). Characterization of fucoxanthin-deficient strains of the haptophyte Tisochrysis lutea induced by heavy-ion beam irradiation. Plant & Cell Physiology 67, 265-274.
Sakamoto, A.N., Yokota, Y., Perroud, P.- F., Ohshima, Y., Nogué, F., Hase, Y (2025). The moss Physcomitrium patens highly relies on homologous recombination to repair DNA double strand breaks. DNA Repair 152, 103881.
Nagayama T, Yamatani H, Yamaguchi N, Igarashi H, Tsuda M, Kato S, Takahashi K, Kaga A (2025). Alternative splice acceptor site in MSH4 gene is responsible for the male sterility by ms5 in soybean. Plant Journal 122: e70192.
Mikami R, Kitamura S, Akita Y (2025). Identification of a functional flavanone 3-hydroxylase gene in a fragrant wild cyclamen species (Cyclamen purpurascens). Horticultural Journal 94, 364-373.
2024
Kitamura S, Satoh K, Hase Y, Yoshihara Y, Oono Y, Shikazono N (2024). Differential contributions of DSB repair pathways to DNA rearrangements following the irradiation of Arabidopsis seeds and seedlings with ion beams irradiation. Plant Journal 120: 445-458.
Satoh K, Takeda K, Nagafune I, Wan Chik WD, Ohkama-Otsu N, Okazaki S, Yokoyama T, Hase Y (2024). Isolation and characterization of high-temperature tolerant mutants of Bradyrhizobium diazoefficiens USDA110 by carbon-ion beam irradiation. Microorganisms 12: 1819.
Kubo S, Araie H, Hase Y, Satoh K, Oono Y, Iwata Y, Yoneda K, Maeda Y, Suzuki I (2024). Isolation and characterization of an alkenone composition mutant in the haptophyte Tisochrysis lutea. Algal Research 80: 103556.
Yang T, Kubo S, Juntila DJ, Iwata Y, Tomita K, Hase Y, Oono Y, Araie H, Yoneda K, Maeda Y, Suzuki I (2024). Aurantiochytrium mutant strains exhibiting different colony colors altered the contents of squalene. Bioscience, Biotechnology & Biochemistry 88: 1424-1431.
Yoshihara R, Shimakura Y, Kitamura S, Satoh K, Sato M, Aono T, Akiyama Y, Hatakeyama S, Tanaka S (2024). A mutation in DNA polymerase γ harbours a shortened lifespan and high sensitivity to mutagens in the filamentous fungus Neurospora crassa. Genetics 229: iyae201.
Saigo T, Satoh K, Kunieda T (2024). Comparative study of gamma radiation tolerance between desiccation-sensitive and desiccation-tolerant tardigrades. Zoological Science 42: 107-115.
2023
Akamatsu K, Satoh K, Shikazono N, Saito T (2023). Proximity estimation and quantification of ionizing radiation-induced DNA lesions in aqueous media using fluorescence spectroscipy. Radiation Research 201, 105-159.
Satoh K, Hoshino W, Hase Y, Kitamura S, Hayashi H, Furuta M, Oono Y (2023). Lethal and mutagenic effects of different LET radiations in Bacillus subtilis spore. Mutation Research/ Fundamental and Molecular Mechanisms of Mutagenesis: 827 111835.
Ishida Y, Zhang C, Satoh K, Ito M (2023). Physiological importance and role of Mg2+ in improving bacterial resistance to cesium. Frontiers in Microbiology: 14 1201121.
Hase Y, Satoh K, Kitamura S (2023). Comparative analysis of seed and seedling irradiation with gamma rays and carbon ions for mutation induction in Arabidipsis. Frontiers in Plant Science 14: 1149083.
Islam MF. Yamatani H, Takami T, Kusaba M, Sakamoto W (2024). Characterization of organelle DNA degradation mediated by DPD1 exonuclease in the rice genome-edited line. Plant Molecular Biology 114: 71.
Yip TM, Hussein SB, Ahmad FB, Hase Y, Wong YP, Koh RY, Ling APK (2024). Biochemical and transcriptomic analysis of disease resistance and early-maturity related genes in NMR-191 and NMR-192 rice mutant lines. International Journal of Science and Technology 10: 1–24.
2022
Kitamura, S., Hirata. S., Satoh, K., Inamura, R., Narumi, I., Oono, Y. (2022). Development of a simple multiple mutation detection system using seed‑coat flavonoid pigments in irradiated Arabidopsis M1 plants. Scientific Reports 12: 22467.
Kitamura, S., Satoh, K., and Oono, Y. (2022). Detection and characterization of genome-wide mutations in M1 vegetative cells of gamma-irradiated Arabidopsis. PLOS Genet. 18: e1009979.
Satoh, K., Hagiwara, K., Katsumata, K., Kubo, A., Yokobori, S.-i., Yamagishi, A., Oono, Y., Narumi, I. (2022) Complete genome sequence of the radioresistant bacterium Deinococcus aetherius ST0316, isolated from air dust collected in the lower stratosphere above Japan. Microbiology Resource Announcements 11: e00836-22
Yanagisawa, M., Asamizu, S., Satoh, K., Oono, Y., and Onaka, H. (2022). Effects of carbon ion beam-induced mutagenesis for the screening of RED production-deficient mutants of Streptomyces coelicolor JCM4020. PLoS ONE 17(7): e0270379.
Koretsune, T., Ishida, Y., Kaneda, Y., Ishiuchi, E., Teshima, M., Marubashi, N., Satoh, K. and Ito, M. (2022). Novel cesium resistance mechanism of alkaliphilic bacterium isolated from jumping spider ground extract. Frontiers in Microbiology, 13: 841821.
202１
Sakamoto, A.N., Sakamoto, T., Yokota, Y., Teranishi, M., Yoshiyama, K.O., and Kimura, S. (2021). SOG1, a plant-specific master regulator of DNA damage responses, originated from nonvascular land plants. Plant Direct 5: e370.
Hase, Y., Satoh, K., Chiba, A., Hirano, Y., Moribayashi, K., and Narumi, K. (2021). Proton-Cluster-Beam Lethality and Mutagenicity in Bacillus subtilis Spores. Quantum Beam Sci. 5: 25.
Oyama, T., Kato, Y., Satoh, K., Oono, Y., Matsuda, M., Hasunuma, T., and Kondo, A. (2021). Development of mutant microalgae that accumulate lipids under nitrate-replete conditions. Algal Res. 60: 102544.
Kato, Y., Oyama, T., Inokuma, K., Vavricka, C.J., Matsuda, M., Hidese, R., Satoh, K., Oono, Y., Chang, J.-S., Hasunuma, T., and Kondo, A. (2021). Enhancing carbohydrate repartitioning into lipid and carotenoid by disruption of microalgae starch debranching enzyme. Commun. Biol. 4: 450.
Shiroshita, Y., Hase, Y., Yamada, T., Abe, J., Kanazawa, A. (2021). Characterization of chlorophyll-deficient soybean mutants obtained by ion-beam irradiation reveals concomitant reduction in isoflavone levels. Genetic Resources and Crop Evolution 68: 1213–1223.
Yokoyama, R., Yokoyama, T., Kaga, Y., Oono, Y., Nishitani, K. (2021). Characterization of Cuscuta campestris Cell Wall Genes Responsible for the Haustorial Invasion of Host Plants. Sci. J. Kanagawa Univ. 32: 21–26.
2020
Hase, Y., Satoh, K., Seito, H., and Oono, Y. (2020) Genetic consequences of acute/chronic gamma and carbon ion irradiation of Arabidopsis thaliana. Frontiers in Plant Science 11: 336.
Oono,Y., Ichida, H., Morita, R., Nozawa, S., Satoh, K., Shimizu, A., Abe, T., Kato, H., and Hase, Y. (2020) Genome sequencing of ion-beam-induced mutants facilitates detection of candidate genes responsible for phenotypes of mutants in rice. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 821: 111691.
Satoh, K., Ozawa, S., Hayashi, H., Tomioka, N., Narumi, I., and Oono, Y. (2020). Complete Genome Sequence of the Cesium-Accumulating Bacterium Rhodococcus qingshengii CS98, Isolated from Soil in Japan. Microbiol. Resour. Announc. 9: e01188-20.
Hase, Y. (2020) Achievement: Sub-Project on Mutation breeding of Rice for Sustainable Agriculture.
Du, Y., Hase, Y., Satoh, K., and Shikazono, N. (2020). Characterization of gamma irradiation-induced mutations in Arabidopsis mutants deficient in non-homologous end joining. J. Radiat. Res. 61: 639–647.
Miyagi, A., Saimaru, T., Harigai, N., Oono, Y., Hase, Y., and Kawai-Yamada, M. (2020). Metabolome analysis of rice leaves to obtain low-oxalate strain from ion beam-mutagenised population. Metabolomics 16: 94.
Yoshihara, R., Mitomi, Y., Okada, M., Shibata, H., Tanokami, M., Nakajima, Y., Inui, H., Oono, Y., Furudate, H., and Tanaka, S. (2020). Effects of Arabidopsis Ku80 deletion on the integration of the left border of T-DNA into plant chromosomal DNA via Agrobacterium tumefaciens. Genes Genet. Syst. 95: 173–182.
Balestrazzi, A., Yoshiyama, K.O., and Sakamoto, A.N. (2020). Editorial: The Maintenance of Genome Integrity in Plants: Novel Challenges in Basic and Applied Research. Front. Plant Sci. 11: 585.
Okamura, M. and Hase, Y. (2020). Advances in mutation technology to create novel carnation varieties. In The Carnation Genome, T. Onozaki and M. Yagi, eds (Springer Singapore: Singapore), pp. 119–134.
Fujinami, S., Satoh, K., Narumi, I., and Ito, M. (2020). Draft Genome Sequence of Calcium-Dependent Novosphingobium sp. Strain TCA1, Isolated from a Hot Spring Containing a High Concentration of Calcium Ions. Microbiol. Resour. Announc. 9: e00145-20.
Zhang, J., Xu, M., Dwiyanti, M.S., Watanabe, S., Yamada, T., Hase, Y., Kanazawa, A., Sayama, T., Ishimoto, M., Liu, B., and Abe, J. (2020). A Soybean Deletion Mutant That Moderates the Repression of Flowering by Cool Temperatures. Front. Plant Sci. 11: 429.
Hussein, S. et al. (2020). Mutation breeding of rice for sustainable agriculture in Malaysia. Achiev. Sub-Project Mutat. Breed. Rice Sustain. Agric. 30–58.
Nakai, H., Nara, Y., Suzuki, C., Tabuchi, H., Nozawa, S., and Hase, Y. (2020). Trials on cross and mutation breeding of rice for adaptability to nature farming. Achiev. Sub-Project Mutat. Breed. Rice Sustain. Agric. 19–29.
2019
Satoh, K. and Oono, Y. (2019). Studies on Application of Ion Beam Breeding to Industrial Microorganisms at TIARA. Quantum Beam Science 3: 11.
Hase, Y., Satoh, K., Chiba, A., Hirano, Y., Tomita, S., Saito, Y., and Narumi, K. (2019). Experimental Study on the Biological Effect of Cluster Ion Beams in Bacillus subtilis Spores. Quantum Beam Science 3: 8.
Sakamoto, A.N. (2019). Translesion Synthesis in Plants: Ultraviolet Resistance and Beyond. Frontiers in Plant Science 10: 1208.
Matuo, Y., Izumi, Y., N. Sakamoto, A., Hase, Y., Satoh, K., and Shimizu, K. (2019). Molecular Analysis of Carbon Ion-Induced Mutations in DNA Repair-Deficient Strains of Saccharomyces cerevisiae. Quantum Beam Science 3: 14.
Shibai, A., Satoh, K., Kawada, M., Kotani, H., Narumi, I., and Furusawa, C. (2019). Complete Genome Sequence of a Radioresistant Bacterial Strain, Deinococcus grandis ATCC 43672. Microbiol. Resour. Announc. 8: e01226-19.
2018
Hase, Y., Satoh, K., Kitamura, S. and Oono, Y. (2018). Physiological status of plant tissue affects the frequency and types of mutations induced by carbon-ion irradiation in Arabidopsis. Sci. Rep. 8: 1394.
Satoh, K., Arai, H., Sanzen, T., Kawaguchi, Y., Hayashi, H., Yokobori, S.S.-I., Yamagishi, A., Oono, Y., and Narumi, I. (2018). Draft genome sequence of the radioresistant bacterium Deinococcus aerius TR0125, isolated from the high atmosphere above Japan. Genome Announc. 6: e00080-18.
Yokota, Y. and Sakamoto, A.N. (2018). The Moss Physcomitrella patens is hyperresistant to DNA double-strand breaks induced by γ-irradiation. Genes (Basel). 9: 76.
Sakamoto, A.N., Kaya, H., and Endo, M. (2018). Deletion of TLS polymerases promotes homologous recombination in Arabidopsis. Plant Signal. Behav. 13: e1483673.
Miyagi, A., Kitano, S., Oono, Y., Hase, Y., Narumi, I., Yamaguchi, M., Uchimiya, H., and Kawai-Yamada, M. (2018). Evaluation of metabolic changes in oxalate-rich plant Rumex obtusifolius L. caused by ion beam irradiation. Plant Physiol. Biochem. 122: 40–45.
Akita, Y., Kitamura, S., Mikami, R., and Ishizaka, H. (2018). Identification of functional flavonol synthase genes from fragrant wild cyclamen (Cyclamen purpurascens). J. Plant Biochem. Biotechnol. 27: 147–155.
2017
Frequent generation of mutants with coincidental changes in multiple traits via ion-beam irradiation in soybean. Mikuriya S, Kasai M, Nakashima K, Natasia, Hase Y, Yamada T, Abe J, Kanazawa A. Genes & Genetic Systems, 92: 153-161, (2017)
An ion beam–induced Arabidopsis mutant with marked chromosomal rearrangement. Sakamoto A, Lan VTT, Fujimoto S, Matsunaga S, Tanaka A. Journal of Radiation Research, 58: 772-781, (2017)
SMALL ACIDIC PROTEIN 1 (SMAP1) and SCFTIR1 ubiquitin proteasome pathway act in concert to induce 2,4-dichlorophenoxyacetic acid-mediated alteration of actin in Arabidopsis roots. Takahashi M, Umetsu K, Oono Y, Higaki T, Blancaflor EB, Rahman A. Plant J., 89: 940-56, (2017)
Effects of ion beam irradiation on size of mutant sector and genetic damage in Arabidopsis. Hase Y, Nozawa S, Narumi I, Oono Y. Nucl. Instrum. Methods Phys. Res., B, 391: 14-9, (2017)
2016
Arabidopsis pab1, a mutant with reduced anthocyanins in immature seeds from banyuls, harbors a mutation in the MATE transporter FFT. Kitamura S, Oono Y, Narumi I. Plant Molecular Biology, 90: 7-18 (2016)
Draft genome sequence of the radioresistant bacterium Deinococcus grandis, isolated from freshwater fish in Japan. Satoh K, Onodera T, Omoso K, Takeda-Yano K, Katayama T, Oono Y, Narumi I. Genome Announcements, 4: e01631-15 (2016)
DNA gyrase of Deinococcus radiodurans is characterized as type II bacterial topoisomerase and its activity is differentially regulated by PprA in vitro. Kota S, Charaka VK, Rajpurohit YS, Satoh K, Narumi I, Misra HS. Extremophiles, 20: 195-205 (2016)
Reviews
Maintenance of genome integrity: DNA damage sensing, signaling, repair and replication in plants. Balestrazzi A, Achary VMM, Macovei A, Yoshiyama KO, Sakamoto AN. Frontiers in Plant Sciences, Research Topics, 7, 64, (2016)
Creation of flower color mutants with ion beams and comprehensive analysis of anthocyanin composition and genetic background. Yoshihiro H. Recent Advances in Polyphenol Research, 5: 127 – 142. (2016).
Report of Cooperative Research Programs in the Field of Ion-beam Breeding between Japan Atomic Energy Agency and Malaysian Nuclear Agency. (Ed.) Zaiton A, Oono Y. JAEA-Review, 2015-037, (2016)
2015
Draft Genome Sequence of Methylobacterium sp. ME121, isolated from soil as a mixed single colony with Kaistia sp. 32K. Fujinami S, Takeda-Yano K, Onodera T, Satoh K, Shimizu T, Wakabayashi Y, Narumi I, Nakamura A, Ito M. Genome Announcements, 3: e01005-15 (2015)
Benomyl-resistant Beauveria bassiana (Hypocreales: Clavicipitaceae) mutants induced by ion beams. Fitriana Y, Shinohara S, Satoh K, Narumi I, Saito T. Applied Entomology and Zoology, 50: 123-129 (2015)
Tissue-dependent somaclonal mutation frequencies and spectra enhanced by ion beam irradiation in chrysanthemum. Okamura M, Hase Y, Furusawa Y, Tanaka A. Euphytica, 202: 333-343 (2015)
Metabolic alterations in leaves of oxalate-rich plant Rumex obtusifolius L. irradiated by gamma rays. Kitano S, Miyagi A, Oono Y, Hase Y, Narumi I, Yamaguchi M, Uchimiya H, Kawai-Yamada, M. Metabolomics, 11: 134-142 (2015)
2014
Draft genome sequence of Bacillus alcalophilus AV1934, a classic alkaliphile isolated from human feces in 1934. Attie O, Jayaprakash A, Shah H, Paulsen I T, Morino M, Takahashi Y, Narumi I, Sachidanandam R, Satoh K, Ito M, Krulwich T A. Genome Announc., 2: e01175-14 (2014)
Draft genome sequence of calcium-dependent Paenibacillus sp. strain TCA20, isolated from a hot spring containing a high concentration of calcium ions. Fujinami S, Takeda-Yano K, Onodera T, Satoh K, Sano M, Takahashi Y, Narumi I, Ito M. Genome Announc., 2: e00866-14 (2014)
Interaction of double-stranded DNA with polymerized PprA protein from Deinococcus radiodurans, Adachi M, Yamada M, Satoh K, Narumi I, Kuroki R. Protein Science, 23: 1349-1358 (2014)
Draft genome sequence of potassium-dependent alkaliphilic bacillus sp. strain TS-2, isolated from a jumping spider, Fujinami S, Takeda K, Onodera T, Satoh K, Sano M, Narumi I, Ito M. Genome Announc., 2: e00458-14 (2014)
Ion-beam and gamma-ray irradiation induces thermotolerant mutants in the entomopathogenic fungus Metarhizium anisopliaes.l.. Fitriana Y, Satoh K, Narumi I, Saito T, Biocontrol Science and Technology, 24: 1052−1061 (2014).